STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02140500Malate dehydrogenase 1, mitochondrial-like protein. (127 aa)    
Predicted Functional Partners:
CKAN_02391500
Fumarate lyase.
  
 0.925
CKAN_00563000
Ketose-bisphosphate aldolase.
   
 
 0.925
CKAN_02685800
Citrate synthase; Belongs to the citrate synthase family.
  
 0.924
CKAN_01822800
Citrate synthase.
  
 0.924
CKAN_00097300
Citrate synthase; Belongs to the citrate synthase family.
  
 0.923
CKAN_00634900
Citrate synthase; Belongs to the citrate synthase family.
  
 0.923
CKAN_02507800
4Fe-4S binding domain-containing protein.
  
 0.916
CKAN_01445800
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
 0.916
CKAN_02627700
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.
  
 
 0.910
CKAN_00584000
Aspartate aminotransferase.
   
 0.899
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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