Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKAN_00031700 | CKAN_00112600 | A0A3S3M8Z5 | A0A443N306 | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | DExH-box ATP-dependent RNA helicase DExH9. | 0.981 |
CKAN_00031700 | CKAN_00640700 | A0A3S3M8Z5 | A0A3S3MDP4 | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | Putative rRNA-processing protein EBP2. | 0.997 |
CKAN_00031700 | CKAN_01195800 | A0A3S3M8Z5 | A0A3S3MNI9 | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | 0.999 |
CKAN_00031700 | CKAN_02376700 | A0A3S3M8Z5 | A0A3S4PT03 | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X1. | 0.929 |
CKAN_00031700 | CKAN_02444100 | A0A3S3M8Z5 | A0A3S4PUV8 | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | Putative nucleolar protein 5-1. | 0.993 |
CKAN_00031700 | CKAN_02530500 | A0A3S3M8Z5 | A0A3S3NIS7 | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. | 0.999 |
CKAN_00112600 | CKAN_00031700 | A0A443N306 | A0A3S3M8Z5 | DExH-box ATP-dependent RNA helicase DExH9. | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | 0.981 |
CKAN_00112600 | CKAN_00640700 | A0A443N306 | A0A3S3MDP4 | DExH-box ATP-dependent RNA helicase DExH9. | Putative rRNA-processing protein EBP2. | 0.819 |
CKAN_00112600 | CKAN_01195800 | A0A443N306 | A0A3S3MNI9 | DExH-box ATP-dependent RNA helicase DExH9. | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | 0.847 |
CKAN_00112600 | CKAN_02376700 | A0A443N306 | A0A3S4PT03 | DExH-box ATP-dependent RNA helicase DExH9. | DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X1. | 0.788 |
CKAN_00112600 | CKAN_02444100 | A0A443N306 | A0A3S4PUV8 | DExH-box ATP-dependent RNA helicase DExH9. | Putative nucleolar protein 5-1. | 0.993 |
CKAN_00112600 | CKAN_02530500 | A0A443N306 | A0A3S3NIS7 | DExH-box ATP-dependent RNA helicase DExH9. | Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. | 0.948 |
CKAN_00307800 | CKAN_00430300 | A0A3S3PXF7 | A0A443NBK9 | RNA-binding protein 8A. | Splicing factor 3B subunit 1. | 0.693 |
CKAN_00307800 | CKAN_00640700 | A0A3S3PXF7 | A0A3S3MDP4 | RNA-binding protein 8A. | Putative rRNA-processing protein EBP2. | 0.805 |
CKAN_00307800 | CKAN_00890300 | A0A3S3PXF7 | A0A3S3Q7R7 | RNA-binding protein 8A. | Protein SDE2. | 0.891 |
CKAN_00307800 | CKAN_01570600 | A0A3S3PXF7 | A0A3S3MV86 | RNA-binding protein 8A. | Protein mago nashi. | 0.999 |
CKAN_00307800 | CKAN_02376700 | A0A3S3PXF7 | A0A3S4PT03 | RNA-binding protein 8A. | DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X1. | 0.821 |
CKAN_00430300 | CKAN_00307800 | A0A443NBK9 | A0A3S3PXF7 | Splicing factor 3B subunit 1. | RNA-binding protein 8A. | 0.693 |
CKAN_00430300 | CKAN_01570600 | A0A443NBK9 | A0A3S3MV86 | Splicing factor 3B subunit 1. | Protein mago nashi. | 0.767 |
CKAN_00430300 | CKAN_02376700 | A0A443NBK9 | A0A3S4PT03 | Splicing factor 3B subunit 1. | DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X1. | 0.833 |
page 1 of 4