STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02498800Ras-related protein Rab7. (243 aa)    
Predicted Functional Partners:
CKAN_00241000
Vacuolar fusion protein MON1.
    
 0.945
CKAN_00245400
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.908
CKAN_01271500
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.908
CKAN_01190800
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.908
CKAN_02610000
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.908
CKAN_01529400
Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.
    
 
 0.903
CKAN_00030800
Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.
    
 
 0.902
CKAN_01955800
Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.
    
 
 0.902
CKAN_02075500
Vacuolar protein-sorting-associated protein 33 isoform X1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.902
CKAN_02001600
Vacuolar protein sorting-associated protein 18.
   
 
 0.833
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.