STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00048600DNA repair helicase XPD isoform X1. (757 aa)    
Predicted Functional Partners:
CKAN_00712800
RNA polymerase II transcription factor B subunit 4 isoform X1.
    
 0.999
CKAN_01681500
DNA repair helicase XPB1.
   
 0.999
CKAN_02076900
Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1.
    
 0.999
CKAN_00452300
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.999
CKAN_01477900
General transcription factor IIH subunit.
    
 0.999
CKAN_01835300
RNA polymerase II transcription factor B subunit 5.
    
 0.998
CKAN_00379700
Pentatricopeptide repeat-containing protein, chloroplastic.
    
 0.996
CKAN_01069500
Cyclin-H1-1 isoform X1; Belongs to the cyclin family.
    
 0.993
CKAN_02466900
Transcription initiation factor IIE subunit alpha.
   
 0.993
CKAN_02521700
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.993
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.