STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00071800Homeobox-leucine zipper protein ATHB-15-like protein. (839 aa)    
Predicted Functional Partners:
CKAN_01273200
mRNA-decapping enzyme subunit 2.
     
 0.652
CKAN_02535800
Exosome complex exonuclease RRP46.
     
 0.577
CKAN_02325300
Putative exosome complex component rrp40 isoform X1.
     
 0.550
CKAN_00514700
Exosome complex component RRP43.
     
 0.543
CKAN_02469500
Exosome complex component RRP4.
     
 0.543
CKAN_02540200
Exosome complex component CSL4.
   
 
  0.541
CKAN_02004600
Exosome complex component RRP41 isoform X1.
     
 0.485
CKAN_02138800
PLAC8 family protein.
  
     0.485
CKAN_02604700
Exosome complex component RRP41-like protein isoform X1.
     
 0.485
CKAN_02221600
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
     
 0.469
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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