STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00112600DExH-box ATP-dependent RNA helicase DExH9. (994 aa)    
Predicted Functional Partners:
CKAN_00276700
WD40 repeat.
   
 0.998
CKAN_00357900
U3 small nucleolar RNA-associated protein 21.
   
 0.997
CKAN_00494700
U3 small nucleolar RNA-associated protein 14 A.
   
 0.997
CKAN_00645200
U3 small nucleolar RNA-associated protein 4.
   
 0.997
CKAN_01625400
Transducin beta-like protein 3.
   
 0.997
CKAN_00071000
Periodic tryptophan protein 2.
   
 0.996
CKAN_01086400
Protein RRP6-like protein 2.
   
 0.995
CKAN_01745700
Protein RRP6-like protein 3 isoform X2.
   
 0.995
CKAN_01791600
U3 small nucleolar RNA-associated protein 18.
   
 0.995
CKAN_01965700
Nucleolar complex protein 4 isoform X1.
   
 0.994
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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