STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00174800Putative lactoylglutathione lyase, chloroplastic. (420 aa)    
Predicted Functional Partners:
CKAN_02507800
4Fe-4S binding domain-containing protein.
  
 
 0.927
CKAN_00710200
Protein DJ-1 D.
  
 
 0.927
CKAN_00012500
Putative hydroxyacylglutathione hydrolase 2, chloroplastic.
  
 
 0.919
CKAN_01789100
DJ-1 protein E isoform X1.
  
 
 0.916
CKAN_00046600
Lactoylglutathione lyase isoform X1.
    
0.903
CKAN_00771400
Threonine dehydratase.
   
 0.897
CKAN_02422100
Tryptophan synthase.
   
 0.895
CKAN_02576300
Homogentisate 1,2-dioxygenase.
    
 0.894
CKAN_01395000
Tryptophan synthase.
   
  0.891
CKAN_00917100
Lactamase_B domain-containing protein.
  
 
 0.890
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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