STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00217800Transcription factor IIIC. (601 aa)    
Predicted Functional Partners:
CKAN_02194200
Tetratricopeptide repeat-containing domain-containing protein.
   
 0.999
CKAN_00473900
Transcription factor TFIIIB component B''-like protein isoform X1.
    
 0.902
CKAN_01777600
Transcription factor TFIIB.
    
 0.896
CKAN_02559600
DNA-directed RNA polymerase III subunit RPC3.
   
 0.886
CKAN_02487900
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.876
CKAN_01424800
Transcription factor TFIIB.
    
 0.845
CKAN_00681200
Transcription factor TFIIB.
    
 0.845
CKAN_01089200
TATA-box-binding protein.
    
 0.843
CKAN_00901200
TATA-box-binding protein.
    
 0.843
CKAN_02634500
DNA-directed RNA polymerase III subunit RPC4.
     
 0.818
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.