STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00269000FRIGIDA-like protein; Belongs to the Frigida family. (918 aa)    
Predicted Functional Partners:
CKAN_00713700
Peptidase C50.
   
 
 0.914
CKAN_00403900
Death-associated protein kinase 1.
   
 
 0.823
CKAN_01924200
Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family.
   
 
 0.819
CKAN_01902500
Kinetochore protein ndc80.
   
  
 0.814
CKAN_00382600
Phospholipase D Z.
     
 0.813
CKAN_02016600
Choline/ethanolaminephosphotransferase 1 isoform X1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.811
CKAN_00100100
Mitotic spindle checkpoint protein BUBR1.
   
 
 0.752
CKAN_01749200
Mitotic checkpoint serine/threonine-protein kinase BUB1.
   
 
 0.752
CKAN_00747500
Mad3/BUB1 region 1.
   
 
 0.752
CKAN_01924400
Putative serine/threonine-protein kinase mps1 isoform X1.
   
  
 0.751
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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