STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00331800Zinc finger protein CONSTANS-LIKE 16. (389 aa)    
Predicted Functional Partners:
CKAN_00602200
Protein GIGANTEA.
    
 0.531
CKAN_02501500
SET domain-containing protein.
    
 0.492
CKAN_01089200
TATA-box-binding protein.
   
 0.491
CKAN_00901200
TATA-box-binding protein.
   
 0.491
CKAN_00244400
Transcription initiation factor TFIID subunit 8, putative isoform 1.
    
 0.487
CKAN_01689400
Histone acetyltransferase GCN5 isoform X2.
    
 0.487
CKAN_02584500
CCT domain-containing protein.
  
     0.479
CKAN_00890900
CCT domain-containing protein.
  
     0.437
CKAN_00958700
Zinc finger protein CO3-like protein.
  
     0.418
CKAN_00706300
Uncharacterized protein.
    
  0.414
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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