STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00377200Pkinase domain-containing protein. (695 aa)    
Predicted Functional Partners:
CKAN_00412500
DnaJ domain-containing protein.
    
 
 0.886
CKAN_01155500
Translocation protein Sec62.
    
 
 0.881
CKAN_02494500
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.823
CKAN_00432500
Protein transport protein Sec61 subunit gamma.
   
 
 0.817
CKAN_00865500
Protein transport protein Sec61 subunit gamma-like protein.
   
 
 0.817
CKAN_00865600
Protein transport protein Sec61 subunit gamma-1-like protein.
   
 
 0.817
CKAN_01306700
SecY/SEC61-alpha family; Belongs to the SecY/SEC61-alpha family.
    
 
 0.790
CKAN_02064900
Protein transport protein Sec61 subunit alpha-like protein; Belongs to the SecY/SEC61-alpha family.
    
 
 0.790
CKAN_02469600
Calcium-binding protein 39-like protein isoform X2.
    
 0.766
CKAN_00006000
Putative MO25-like protein isoform X1.
    
 0.766
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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