STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00378900Pentatricopeptide repeat-containing protein, chloroplastic. (829 aa)    
Predicted Functional Partners:
CKAN_02268800
RNA recognition motif domain-containing protein.
   
 
 0.532
CKAN_00423500
30S ribosomal protein 3-1, chloroplastic-like protein.
   
 
 0.475
CKAN_01861400
Ribonucleoprotein, chloroplastic.
   
 
 0.474
CKAN_01542000
Ribonucleoprotein, chloroplastic.
   
 
 0.474
CKAN_01802300
50S ribosomal protein L18 isoform X1.
    
 
 0.468
CKAN_00446700
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
  0.463
CKAN_00451200
50S ribosomal protein L3-1, chloroplastic; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.455
CKAN_01975300
Pentatricopeptide repeat-containing protein.
   
  
 0.446
CKAN_02345900
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
 0.432
CKAN_00204400
Pentatricopeptide repeat.
  
   
 0.417
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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