STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00394000Protein MEMO1. (291 aa)    
Predicted Functional Partners:
CKAN_01103400
AMMECR1 domain-containing protein.
 
    0.847
CKAN_01756200
Putative gamma-aminobutyrate transaminase 3, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.699
CKAN_00697300
Alanine--glyoxylate aminotransferase 2 1, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.699
CKAN_00756100
Alanine--glyoxylate aminotransferase 2 2, mitochondrial-like protein isoform X2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.699
CKAN_00992100
Alanine--glyoxylate aminotransferase 2 3, mitochondrial.
   
 
  0.699
CKAN_01204200
Ras domain-containing protein.
    
 0.608
CKAN_01485900
Rac-like GTP-binding protein 5.
    
 0.608
CKAN_01567100
Rac-like GTP-binding protein RAC2.
    
 0.608
CKAN_00068600
Rac-like GTP-binding protein ARAC7 isoform X2.
    
 0.608
CKAN_00068800
Rac-like GTP-binding protein ARAC7.
    
 0.608
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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