STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00410000NF-kappa-B-activating protein. (396 aa)    
Predicted Functional Partners:
CKAN_01352700
Protein FAM32A isoform X1.
    
 0.934
CKAN_00890300
Protein SDE2.
    
 0.932
CKAN_00610100
PRKR-interacting protein 1.
   
 0.932
CKAN_01488900
Pre-mRNA-splicing factor SLU7.
   
 0.925
CKAN_01231400
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.903
CKAN_00976200
Pre-mRNA-splicing factor syf2-like protein.
    
  0.903
CKAN_02017800
Pre-mRNA-splicing factor CWC22.
   
  0.885
CKAN_00302400
Pre-mRNA-splicing factor CWC22.
   
  0.885
CKAN_02377400
Hepatocellular carcinoma-associated antigen 59.
   
 
  0.819
CKAN_00068500
DEAD-box ATP-dependent RNA helicase 35.
    
  0.819
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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