STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00428800Protein KRI1. (648 aa)    
Predicted Functional Partners:
CKAN_02545100
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.998
CKAN_00290300
DUF4477 domain-containing protein.
   
 0.993
CKAN_00533700
Uncharacterized protein.
   
  0.991
CKAN_02456500
Ribonuclease P/MRP.
   
  0.991
CKAN_01878800
Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.
   
  0.990
CKAN_02345700
Peter Pan-like protein isoform X1.
   
    0.976
CKAN_02186900
Nucleolar complex protein 2.
   
  
 0.956
CKAN_00565500
Nucleolar protein 14.
   
 
 0.951
CKAN_01980800
Pre-rRNA-processing protein ESF1.
   
  
 0.948
CKAN_02376100
DEAD-box ATP-dependent RNA helicase 28; Belongs to the DEAD box helicase family.
   
 
 0.944
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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