STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00485400Putative Xaa-Pro aminopeptidase 3 isoform X3. (560 aa)    
Predicted Functional Partners:
CKAN_01201700
Phytanoyl-CoA dioxygenase.
  
 
 0.893
CKAN_02671000
Photosystem II reaction center Psb28 protein; Belongs to the Psb28 family.
   
 
 0.822
CKAN_00873500
D-amino acid dehydrogenase-like protein.
  
 0.822
CKAN_00873600
Putative D-amino acid oxidase PA4548 isoform X1.
  
 0.822
CKAN_01253500
Protein WVD2-like protein 4 isoform X2.
   
 
 0.822
CKAN_02264500
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.822
CKAN_01676800
Monodehydroascorbate reductase, chloroplastic/mitochondrial.
    
 0.782
CKAN_01218600
Monodehydroascorbate reductase.
    
 0.782
CKAN_02321200
Monodehydroascorbate reductase 4, peroxisomal.
    
 0.782
CKAN_02657700
Monodehydroascorbate reductase.
    
 0.782
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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