STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00485700Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (440 aa)    
Predicted Functional Partners:
CKAN_01469500
30-cleavage and polyadenylation specificity factor 30.
   
 0.995
CKAN_00040700
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.948
CKAN_02659900
RNA recognition motif domain-containing protein.
    
 0.934
CKAN_00385600
FIP1V-like protein.
   
 0.933
CKAN_01129300
FIP1V-like protein.
   
 0.933
CKAN_02495000
Symplekin isoform X1.
   
 0.928
CKAN_00022600
Ribonuclease J isoform X1.
   
 0.919
CKAN_00158100
Zinc finger CCCH domain-containing protein 7.
    
 0.919
CKAN_00237400
Uncharacterized protein.
   
 0.919
CKAN_00218800
WD40 repeat.
    
 0.916
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.