STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00503000Uncharacterized protein. (205 aa)    
Predicted Functional Partners:
CKAN_02082000
Rubisco accumulation factor 1.1, chloroplastic-like protein.
  
     0.483
CKAN_01675600
Uncharacterized protein.
  
   0.480
CKAN_02050300
Protein PAM68, chloroplastic.
  
   0.480
CKAN_00765600
NADPH-quinone oxidoreductase subunit N, chloroplastic.
  
     0.449
CKAN_01332100
Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic isoform X2.
  
     0.447
CKAN_00919200
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1.
  
     0.434
CKAN_02246000
Uncharacterized protein.
  
    0.413
CKAN_00467400
Uncharacterized protein.
  
    0.406
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.