STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00535700tRNAHis guanylyltransferase 1 isoform X1. (507 aa)    
Predicted Functional Partners:
CKAN_00706500
EPS15 EH.
     
 0.647
CKAN_02216700
EPS15 EH.
     
 0.647
CKAN_01391800
tRNA wybutosine-synthesizing protein 2/3/4 isoform X2.
   
  
 0.502
CKAN_02451000
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
  
 0.480
CKAN_02547600
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
   
  
 0.473
CKAN_02074700
Histidine--tRNA ligase, chloroplastic/mitochondrial isoform X1.
    
 
 0.468
CKAN_00717100
Histidine--tRNA ligase, cytoplasmic isoform X1.
    
 
 0.468
CKAN_02075100
Histidine--tRNA ligase, chloroplastic/mitochondrial isoform X1.
    
 
 0.468
CKAN_00565500
Nucleolar protein 14.
   
  
 0.442
CKAN_02202300
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.437
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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