STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00563200E3 ubiquitin-protein ligase MBR1-like protein. (239 aa)    
Predicted Functional Partners:
CKAN_01011200
Agmatine coumaroyltransferase-2-like protein.
    
 
 0.456
CKAN_01945300
RING-H2 finger protein ATL80-like protein.
  
     0.432
CKAN_01661100
Ubiquitin-60S ribosomal protein L40-like protein.
    
 0.430
CKAN_00947100
Ubiquitin-60S ribosomal protein L40-like protein.
    
 0.430
CKAN_01793500
Ubiquitin-60S ribosomal protein L40 isoform X1.
    
 0.430
CKAN_02489400
E3 ubiquitin-protein ligase UPL4 isoform X1.
    
 0.421
CKAN_02489600
E3 ubiquitin-protein ligase UPL4 isoform X1.
    
 0.421
CKAN_02168100
RING-H2 finger protein ATL52-like protein.
  
     0.417
CKAN_00651300
Putative E3 ubiquitin-protein ligase RHY1A isoform X1.
  
   
 0.409
CKAN_01485800
E3 ubiquitin-protein ligase UPL3-like protein.
     
 0.400
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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