STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00558800RING-H2 finger protein ATL48-like protein. (81 aa)    
Predicted Functional Partners:
CKAN_00229700
Cytochrome c oxidase subunit 6a, mitochondrial-like protein isoform X2; Belongs to the cytochrome c oxidase subunit 6A family.
   
 
 0.943
CKAN_01936400
Cytochrome c oxidase subunit 6a, mitochondrial-like protein isoform X4; Belongs to the cytochrome c oxidase subunit 6A family.
   
 
 0.943
CKAN_00592200
Putative cytochrome c oxidase subunit 5b-like protein.
   
 
 0.925
CKAN_01181400
Putative cytochrome c oxidase subunit 5b-like protein.
   
 
 0.925
CKAN_00601900
Cytochrome c oxidase.
   
 
 0.864
CKAN_01902100
Cytochrome c oxidase subunit 6b-1-like protein.
   
 
 0.864
CKAN_02047300
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
   
 
 0.864
CKAN_01288200
Cytochrome c oxidase subunit 6b-1 isoform X2.
   
 
 0.864
CKAN_01424700
Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
 
 0.811
CKAN_00127400
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
 
 0.767
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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