STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00581800Alpha-glucan water dikinase 2 isoform X1. (1308 aa)    
Predicted Functional Partners:
CKAN_00771000
Putative cysteine protease RD19C; Belongs to the peptidase C1 family.
   
 0.717
CKAN_02146700
Putative cysteine protease RD19C; Belongs to the peptidase C1 family.
   
 0.717
CKAN_02167500
Glycoside hydrolase.
   
  
 0.515
CKAN_00358200
Isoamylase 1, chloroplastic.
   
  
 0.514
CKAN_00449300
4-alpha-glucanotransferase DPE2.
   
  
 0.509
CKAN_01892200
4-alpha-glucanotransferase.
   
  
 0.495
CKAN_00125600
Soluble starch synthase 3.
      
 0.487
CKAN_02219600
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X1.
   
  
 0.468
CKAN_02113400
Phosphoglucan phosphatase DSP4, amyloplastic isoform X1.
   
  
 0.468
CKAN_02679000
Glycosyl transferase.
   
  
 0.444
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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