STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00601500Serine/threonine-protein kinase AFC3 isoform X3. (407 aa)    
Predicted Functional Partners:
CKAN_01530700
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
    0.715
CKAN_00385000
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
    0.715
CKAN_01124200
FHA domain-containing protein DDL isoform X2.
    
   0.632
CKAN_01500800
Serine/arginine repetitive matrix protein 1-like protein.
    
 
 0.623
CKAN_00706400
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
0.572
CKAN_01109100
Bifunctional pinoresinol-lariciresinol reductase 2-like protein.
    
 
 0.572
CKAN_01339200
SRSF protein kinase 1-like protein; Belongs to the protein kinase superfamily.
    
 
0.572
CKAN_01575400
NADP-binding domain-containing protein.
    
 
 0.572
CKAN_01966500
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
0.572
CKAN_00675600
Bifunctional pinoresinol-lariciresinol reductase 2-like protein.
    
 
 0.572
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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