STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00657900Polypyrimidine tract-binding protein 3-like protein. (448 aa)    
Predicted Functional Partners:
CKAN_01967600
Heterogeneous nuclear ribonucleoprotein H3 isoform X1.
   
 0.780
CKAN_01540200
Nuclear cap-binding protein subunit 2.
    
 0.759
CKAN_00497800
Nuclear cap-binding protein subunit 1.
   
 0.720
CKAN_00567600
Serine/arginine repetitive matrix protein 2-like protein.
    
 0.713
CKAN_01041400
Zinc finger protein.
    
 0.713
CKAN_01542300
Serine/arginine-rich splicing factor SR34A isoform X1.
   
 0.712
CKAN_02395600
RNA recognition motif domain-containing protein.
   
0.712
CKAN_01209700
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 
  0.700
CKAN_00770600
General transcription factor IIF subunit 2.
   
 
  0.699
CKAN_00627600
SUPPRESSOR OF ABI3-5 isoform X1.
    
 0.691
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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