STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00763900Root phototropism protein 2 isoform X1; Belongs to the NPH3 family. (581 aa)    
Predicted Functional Partners:
CKAN_00055500
J domain-containing protein required for chloroplast accumulation response 1 isoform X1.
   
  
 0.512
CKAN_00986700
Ribosomal protein 117; Belongs to the universal ribosomal protein uL14 family.
      
 0.493
CKAN_00102400
Putative LOV domain-containing protein.
    
 
 0.447
CKAN_02486900
Putative LOV domain-containing protein.
    
 
 0.447
CKAN_01763600
Switch-associated protein 70 isoform X1.
      
 0.433
CKAN_00761200
N-carbamoylputrescine amidase.
      
 0.433
CKAN_01783800
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
      
 0.422
CKAN_02335000
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
      
 0.418
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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