STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00775500Transcription initiation factor TFIID subunit 14b. (251 aa)    
Predicted Functional Partners:
CKAN_02382900
SWR1-complex protein 4.
   
 0.957
CKAN_00770600
General transcription factor IIF subunit 2.
   
 0.941
CKAN_00205900
DNA-directed RNA polymerases II, IV and V subunit 11.
   
 0.929
CKAN_02149800
Transformation/transcription domain-containing protein; Belongs to the PI3/PI4-kinase family.
   
 0.929
CKAN_02607600
RuvB-like helicase; Belongs to the RuvB family.
    
 0.923
CKAN_02083600
TATA box-binding protein-associated factor RNA polymerase I subunit B.
   
 0.921
CKAN_01509900
SWR1 complex subunit 2 isoform X2.
    
 0.918
CKAN_00167900
RuvB-like helicase; Belongs to the RuvB family.
    
 0.917
CKAN_02333300
Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2.
    
 0.914
CKAN_00002200
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.913
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.