STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00781500Riboflavin biosynthesis protein PYRD, chloroplastic. (410 aa)    
Predicted Functional Partners:
CKAN_02048600
CMP/dCMP deaminase.
   
 0.948
CKAN_00528900
Putative monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X2.
 
  
 0.943
CKAN_02482600
Putative monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X2.
 
  
 0.943
CKAN_00850100
Putative bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic isoform X1.
 
  
 0.915
CKAN_00849800
Putative bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic isoform X1.
 
  
 0.915
CKAN_00298900
Putative bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic.
 
  
 0.915
CKAN_01115700
Putative bifunctional dihydrofolate reductase-thymidylate synthase isoform X1.
  
 
 0.908
CKAN_00339900
CMP/dCMP deaminase.
  
  
0.903
CKAN_02626200
D-ribitol-5-phosphate phosphatase isoform X1.
    
 0.875
CKAN_00040100
HAD-like domain-containing protein.
    
  0.872
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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