STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00789000Transport inhibitor response 1-like protein. (601 aa)    
Predicted Functional Partners:
CKAN_02123300
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.634
CKAN_00806400
RING-box protein 1a.
    
 0.621
CKAN_02523800
RING-box protein 1a-like protein.
    
 0.621
CKAN_01439700
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
     
 0.611
CKAN_01937000
Cullin-associated NEDD8-dissociated protein 1 isoform X1.
    
 0.582
CKAN_02490700
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
     
 0.545
CKAN_00692500
Cullin-3A-like protein isoform X1; Belongs to the cullin family.
    
 0.540
CKAN_02465100
Cullin-1 isoform X1; Belongs to the cullin family.
    
 0.540
CKAN_00510800
Cullin-1-like protein; Belongs to the cullin family.
    
 0.540
CKAN_02341700
Cullin-1-like protein; Belongs to the cullin family.
    
 0.540
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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