CKAN_00797400 protein (Cinnamomum micranthum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CKAN_00797400

RNA-binding ASCH domain-containing protein. (278 aa)

Predicted Functional Partners:

CKAN_00832900

0.827

CKAN_02218100

0.801

CKAN_00703600

0.801

CKAN_01010200

0.801

CKAN_01798100

0.763

CKAN_02111400

0.763

CKAN_02501500

0.719

CKAN_01001300

0.680

CKAN_01829800

0.680

CKAN_00741300

0.680

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00703600	CKAN_00741300	A0A3S3NFA5	A0A443NK01	Phosphoinositide phosphatase SAC6 isoform X1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.631
CKAN_00703600	CKAN_00797400	A0A3S3NFA5	A0A443NLG4	Phosphoinositide phosphatase SAC6 isoform X1.	RNA-binding ASCH domain-containing protein.	0.801
CKAN_00703600	CKAN_01001300	A0A3S3NFA5	A0A3S3P2A0	Phosphoinositide phosphatase SAC6 isoform X1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.631
CKAN_00703600	CKAN_01010200	A0A3S3NFA5	A0A3S3Q8L1	Phosphoinositide phosphatase SAC6 isoform X1.	Phosphoinositide phosphatase SAC8 isoform X2.	0.875
CKAN_00703600	CKAN_01829800	A0A3S3NFA5	A0A3S3QRA0	Phosphoinositide phosphatase SAC6 isoform X1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.631
CKAN_00741300	CKAN_00703600	A0A443NK01	A0A3S3NFA5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Phosphoinositide phosphatase SAC6 isoform X1.	0.631
CKAN_00741300	CKAN_00797400	A0A443NK01	A0A443NLG4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	RNA-binding ASCH domain-containing protein.	0.680
CKAN_00741300	CKAN_01010200	A0A443NK01	A0A3S3Q8L1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Phosphoinositide phosphatase SAC8 isoform X2.	0.631
CKAN_00741300	CKAN_02218100	A0A443NK01	A0A3S3MZF8	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Phosphoinositide phosphatase SAC6 isoform X1.	0.631
CKAN_00797400	CKAN_00703600	A0A443NLG4	A0A3S3NFA5	RNA-binding ASCH domain-containing protein.	Phosphoinositide phosphatase SAC6 isoform X1.	0.801
CKAN_00797400	CKAN_00741300	A0A443NLG4	A0A443NK01	RNA-binding ASCH domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.680
CKAN_00797400	CKAN_00832900	A0A443NLG4	A0A3S3MH08	RNA-binding ASCH domain-containing protein.	UDP-N-acetylglucosamine transferase subunit ALG13 isoform X1.	0.827
CKAN_00797400	CKAN_01001300	A0A443NLG4	A0A3S3P2A0	RNA-binding ASCH domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.680
CKAN_00797400	CKAN_01010200	A0A443NLG4	A0A3S3Q8L1	RNA-binding ASCH domain-containing protein.	Phosphoinositide phosphatase SAC8 isoform X2.	0.801
CKAN_00797400	CKAN_01798100	A0A443NLG4	A0A443PDW3	RNA-binding ASCH domain-containing protein.	Chlorophyllase-1.	0.763
CKAN_00797400	CKAN_01829800	A0A443NLG4	A0A3S3QRA0	RNA-binding ASCH domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.680
CKAN_00797400	CKAN_02111400	A0A443NLG4	A0A443PMD4	RNA-binding ASCH domain-containing protein.	Stress responsive alpha-beta barrel.	0.763
CKAN_00797400	CKAN_02218100	A0A443NLG4	A0A3S3MZF8	RNA-binding ASCH domain-containing protein.	Phosphoinositide phosphatase SAC6 isoform X1.	0.801
CKAN_00797400	CKAN_02501500	A0A443NLG4	A0A3S4PWC7	RNA-binding ASCH domain-containing protein.	SET domain-containing protein.	0.719
CKAN_00832900	CKAN_00797400	A0A3S3MH08	A0A443NLG4	UDP-N-acetylglucosamine transferase subunit ALG13 isoform X1.	RNA-binding ASCH domain-containing protein.	0.827

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About