STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00831400Rho GTPase-activating protein gacV-like protein. (641 aa)    
Predicted Functional Partners:
CKAN_02158800
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.942
CKAN_01748000
Putative aconitate hydratase, cytoplasmic.
  
 
 0.942
CKAN_00783300
Aconitate hydratase, cytoplasmic.
  
 
 0.942
CKAN_02219200
N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase.
    
 0.847
CKAN_00511200
NEDD8-activating enzyme E1 catalytic subunit.
     
 0.791
CKAN_02490700
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
     
 0.756
CKAN_00142700
Acetyl-coenzyme A synthetase.
  
 
 0.718
CKAN_00086800
Putative acyl-activating enzyme 18, peroxisomal isoform X1.
  
 
 0.718
CKAN_00973100
Ca2+ sensor EF-Hand superfamily.
  
 
 0.718
CKAN_00606800
Filament-like plant protein 7.
    
 0.709
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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