STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00855500UBX domain-containing protein 4-like protein. (413 aa)    
Predicted Functional Partners:
CKAN_00017700
Plant UBX domain-containing protein 11.
    
 0.983
CKAN_02317600
Plant UBX domain-containing protein 4.
    
 0.976
CKAN_01443900
Plant UBX domain-containing protein 4.
    
 0.976
CKAN_00125200
AAA domain-containing protein/CDC48_N domain-containing protein/CDC48_2 domain-containing protein.
    
 0.966
CKAN_02333900
AAA domain-containing protein/CDC48_N domain-containing protein/CDC48_2 domain-containing protein.
    
 0.966
CKAN_02076400
Cell division cycle protein 48.
    
 0.966
CKAN_00589800
Protein CbbX.
    
 0.907
CKAN_00111400
Cell division control protein 48 B-like protein; Belongs to the AAA ATPase family.
    
 0.907
CKAN_02467800
NPL4-like protein 2.
   
 
 0.853
CKAN_01289800
Plant UBX domain-containing protein 7.
    
 
 0.830
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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