CKAN_00899700 protein (Cinnamomum micranthum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CKAN_00899700

Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (113 aa)

Predicted Functional Partners:

CKAN_00205900

0.987

CKAN_01209700

0.986

CKAN_01958700

0.985

CKAN_01598500

0.982

CKAN_01175400

0.980

CKAN_00059200

0.977

CKAN_02769100

0.977

CKAN_02435000

0.976

CKAN_00237000

0.966

CKAN_01948900

0.966

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00059200	CKAN_00205900	A0A3S3MEL9	A0A3S3PUM6	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases II, IV and V subunit 11.	0.994
CKAN_00059200	CKAN_00237000	A0A3S3MEL9	A0A3S3PV51	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	Protein EMBRYO DEFECTIVE 1674-like protein isoform X1.	0.985
CKAN_00059200	CKAN_00899700	A0A3S3MEL9	A0A443NPA9	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.977
CKAN_00059200	CKAN_01175400	A0A3S3MEL9	A0A443NWV9	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases II, IV and V subunit 6A isoform X1.	0.999
CKAN_00059200	CKAN_01209700	A0A3S3MEL9	A0A443NXT4	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.993
CKAN_00059200	CKAN_01598500	A0A3S3MEL9	A0A3S3QLH0	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	FACT complex subunit SPT16-like protein.	0.983
CKAN_00059200	CKAN_01948900	A0A3S3MEL9	A0A443PHY9	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases II, IV and V subunit 12.	0.985
CKAN_00059200	CKAN_01958700	A0A3S3MEL9	A0A3S3QVV1	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerase II subunit 4.	0.993
CKAN_00059200	CKAN_02435000	A0A3S3MEL9	A0A443PW79	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases IV and V subunit 4 isoform X1.	0.972
CKAN_00205900	CKAN_00059200	A0A3S3PUM6	A0A3S3MEL9	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	0.994
CKAN_00205900	CKAN_00237000	A0A3S3PUM6	A0A3S3PV51	DNA-directed RNA polymerases II, IV and V subunit 11.	Protein EMBRYO DEFECTIVE 1674-like protein isoform X1.	0.996
CKAN_00205900	CKAN_00899700	A0A3S3PUM6	A0A443NPA9	DNA-directed RNA polymerases II, IV and V subunit 11.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.987
CKAN_00205900	CKAN_01175400	A0A3S3PUM6	A0A443NWV9	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II, IV and V subunit 6A isoform X1.	0.999
CKAN_00205900	CKAN_01209700	A0A3S3PUM6	A0A443NXT4	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
CKAN_00205900	CKAN_01598500	A0A3S3PUM6	A0A3S3QLH0	DNA-directed RNA polymerases II, IV and V subunit 11.	FACT complex subunit SPT16-like protein.	0.976
CKAN_00205900	CKAN_01948900	A0A3S3PUM6	A0A443PHY9	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II, IV and V subunit 12.	0.996
CKAN_00205900	CKAN_01958700	A0A3S3PUM6	A0A3S3QVV1	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerase II subunit 4.	0.999
CKAN_00205900	CKAN_02435000	A0A3S3PUM6	A0A443PW79	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases IV and V subunit 4 isoform X1.	0.994
CKAN_00205900	CKAN_02769100	A0A3S3PUM6	A0A3S3NMM3	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	0.994
CKAN_00237000	CKAN_00059200	A0A3S3PV51	A0A3S3MEL9	Protein EMBRYO DEFECTIVE 1674-like protein isoform X1.	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	0.985

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About