STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00929300Squamosa promoter-binding-like protein 7 isoform X1. (352 aa)    
Predicted Functional Partners:
CKAN_01963400
DNA polymerase delta small subunit isoform X1.
    
 0.882
CKAN_02200600
DNA polymerase.
   
 0.850
CKAN_02342800
Putative small nuclear ribonucleoprotein F.
    
  0.829
CKAN_00303400
ERCC4 domain-containing protein.
    
 0.783
CKAN_02437600
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.768
CKAN_01364900
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.768
CKAN_02290700
NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 8-B-like protein.
   
 
 0.746
CKAN_01806100
NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 13-B.
    
 
 0.732
CKAN_01342800
NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 7.
   
 
 0.731
CKAN_02671500
Notchless protein.
   
 
 0.724
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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