STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00972400Protein SMG9 isoform X2. (421 aa)    
Predicted Functional Partners:
CKAN_02144300
Uncharacterized protein.
  
 
 0.999
CKAN_00641600
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.951
CKAN_00252700
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
    
 0.951
CKAN_02732500
Serine/threonine-protein kinase TOR.
    
 0.951
CKAN_00307800
RNA-binding protein 8A.
    
 
 0.860
CKAN_00404200
Protein SMG7-like protein.
   
 
 0.787
CKAN_01125100
Protein SMG7-like protein.
   
 
 0.787
CKAN_01101800
mRNA-decapping enzyme-like protein.
     
 0.723
CKAN_01407700
Uncharacterized protein.
     
 0.723
CKAN_01967300
Regulator of nonsense transcripts UPF2 isoform X2.
      
 0.527
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.