STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00976200Pre-mRNA-splicing factor syf2-like protein. (311 aa)    
Predicted Functional Partners:
CKAN_01231400
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.999
CKAN_01488900
Pre-mRNA-splicing factor SLU7.
   
 0.997
CKAN_02244000
Crooked neck-like protein 1.
    
 0.996
CKAN_00117800
RNA-processing protein.
    
 0.996
CKAN_01946900
Protein YLS9-like protein.
    
  0.994
CKAN_00224000
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7.
    
 0.991
CKAN_02514600
Replication protein A subunit isoform X1.
    
 0.990
CKAN_02509400
Pre-mRNA-splicing factor CWC25.
   
 0.989
CKAN_00930500
Pre-mRNA-processing factor 17 isoform X1.
    
 0.985
CKAN_01321200
WD40 repeat.
    
 0.985
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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