CKAN_00980000 protein (Cinnamomum micranthum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CKAN_00980000

RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. (582 aa)

Predicted Functional Partners:

CKAN_02151200

0.850

CKAN_02780000

0.841

CKAN_00578400

0.839

CKAN_01760500

0.839

CKAN_01212700

0.834

CKAN_01282300

0.834

CKAN_02266600

0.831

CKAN_01282400

0.826

CKAN_01295200

0.826

CKAN_00985500

0.820

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00578400	CKAN_00980000	A0A3S3M588	A0A443NRI1	50S ribosomal protein L25-like protein.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	0.839
CKAN_00578400	CKAN_00985500	A0A3S3M588	A0A443NRN7	50S ribosomal protein L25-like protein.	50S ribosomal protein L28, chloroplastic.	0.984
CKAN_00578400	CKAN_01212700	A0A3S3M588	A0A3S3N9N6	50S ribosomal protein L25-like protein.	Ribosomal protein S4/S9.	0.991
CKAN_00578400	CKAN_01282300	A0A3S3M588	A0A443NZU7	50S ribosomal protein L25-like protein.	40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.	0.991
CKAN_00578400	CKAN_01282400	A0A3S3M588	A0A443NZS7	50S ribosomal protein L25-like protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.980
CKAN_00578400	CKAN_01295200	A0A3S3M588	A0A443P0A0	50S ribosomal protein L25-like protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.980
CKAN_00578400	CKAN_02151200	A0A3S3M588	A0A443PNJ6	50S ribosomal protein L25-like protein.	LisH domain-containing protein ARMC9-like protein.	0.996
CKAN_00578400	CKAN_02266600	A0A3S3M588	A0A443PRL9	50S ribosomal protein L25-like protein.	Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family.	0.959
CKAN_00578400	CKAN_02780000	A0A3S3M588	A0A443Q5H7	50S ribosomal protein L25-like protein.	ATP synthase F0, A subunit; Belongs to the universal ribosomal protein uS2 family.	0.976
CKAN_00980000	CKAN_00578400	A0A443NRI1	A0A3S3M588	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	50S ribosomal protein L25-like protein.	0.839
CKAN_00980000	CKAN_00985500	A0A443NRI1	A0A443NRN7	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	50S ribosomal protein L28, chloroplastic.	0.820
CKAN_00980000	CKAN_01212700	A0A443NRI1	A0A3S3N9N6	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	Ribosomal protein S4/S9.	0.834
CKAN_00980000	CKAN_01282300	A0A443NRI1	A0A443NZU7	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.	0.834
CKAN_00980000	CKAN_01282400	A0A443NRI1	A0A443NZS7	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.826
CKAN_00980000	CKAN_01295200	A0A443NRI1	A0A443P0A0	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.826
CKAN_00980000	CKAN_01760500	A0A443NRI1	A0A3S3MYC8	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	50S ribosomal protein L25.	0.839
CKAN_00980000	CKAN_02151200	A0A443NRI1	A0A443PNJ6	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	LisH domain-containing protein ARMC9-like protein.	0.850
CKAN_00980000	CKAN_02266600	A0A443NRI1	A0A443PRL9	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family.	0.831
CKAN_00980000	CKAN_02780000	A0A443NRI1	A0A443Q5H7	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	ATP synthase F0, A subunit; Belongs to the universal ribosomal protein uS2 family.	0.841
CKAN_00985500	CKAN_00578400	A0A443NRN7	A0A3S3M588	50S ribosomal protein L28, chloroplastic.	50S ribosomal protein L25-like protein.	0.984

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About