STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01003600Superoxide dismutase Fe, chloroplastic-like protein. (297 aa)    
Predicted Functional Partners:
CKAN_00087500
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.981
CKAN_01216500
Superoxide dismutase Cu-Zn, chloroplastic.
   
 0.981
CKAN_02338100
Superoxide dismutase.
   
 0.978
CKAN_02467300
Superoxide dismutase Cu-Zn 2 isoform X2.
   
 0.978
CKAN_01535800
30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.937
CKAN_00073000
Endoribonuclease YbeY.
   
 
 0.931
CKAN_01960100
Superoxide dismutase Fe 3, chloroplastic isoform X1.
  
0.930
CKAN_01534900
Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.928
CKAN_00506700
Uncharacterized protein.
   
 0.925
CKAN_01809600
39S ribosomal protein L47, mitochondrial-like protein.
   
 
 0.920
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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