CKAN_01028200 protein (Cinnamomum micranthum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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filled nodes:
a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

CKAN_01028200

Protein JINGUBANG. (468 aa)

Predicted Functional Partners:

CKAN_00102800

0.902

CKAN_01090800

0.865

CKAN_01680800

0.849

CKAN_00461200

0.845

CKAN_01211800

0.845

CKAN_00569300

0.792

CKAN_01125500

0.774

CKAN_02658200

0.735

CKAN_01779500

0.709

CKAN_02335400

0.704

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

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... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00102800	CKAN_00461200	A0A3S3MQ47	A0A3S3PYZ5	Tetratricopeptide repeat-containing domain-containing protein.	DExH-box ATP-dependent RNA helicase DExH11.	0.990
CKAN_00102800	CKAN_01028200	A0A3S3MQ47	A0A443NSU4	Tetratricopeptide repeat-containing domain-containing protein.	Protein JINGUBANG.	0.902
CKAN_00102800	CKAN_01211800	A0A3S3MQ47	A0A443NXV1	Tetratricopeptide repeat-containing domain-containing protein.	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic.	0.989
CKAN_00461200	CKAN_00102800	A0A3S3PYZ5	A0A3S3MQ47	DExH-box ATP-dependent RNA helicase DExH11.	Tetratricopeptide repeat-containing domain-containing protein.	0.990
CKAN_00461200	CKAN_01028200	A0A3S3PYZ5	A0A443NSU4	DExH-box ATP-dependent RNA helicase DExH11.	Protein JINGUBANG.	0.845
CKAN_00569300	CKAN_01028200	A0A3S3MIT1	A0A443NSU4	Protein LEO1.	Protein JINGUBANG.	0.792
CKAN_00569300	CKAN_01090800	A0A3S3MIT1	A0A3S4NVK8	Protein LEO1.	RNA polymerase II accessory factor.	0.999
CKAN_00569300	CKAN_01125500	A0A3S3MIT1	A0A3S3NM86	Protein LEO1.	Tetratricopeptide TPR-1.	0.999
CKAN_00569300	CKAN_01680800	A0A3S3MIT1	A0A3S3MX02	Protein LEO1.	Protein PAF1.	0.999
CKAN_00569300	CKAN_01779500	A0A3S3MIT1	A0A3S4PD06	Protein LEO1.	DNA damage-binding protein 1.	0.902
CKAN_00569300	CKAN_02658200	A0A3S3MIT1	A0A443Q2C3	Protein LEO1.	DNA excision repair protein ERCC-8 isoform X1.	0.809
CKAN_01028200	CKAN_00102800	A0A443NSU4	A0A3S3MQ47	Protein JINGUBANG.	Tetratricopeptide repeat-containing domain-containing protein.	0.902
CKAN_01028200	CKAN_00461200	A0A443NSU4	A0A3S3PYZ5	Protein JINGUBANG.	DExH-box ATP-dependent RNA helicase DExH11.	0.845
CKAN_01028200	CKAN_00569300	A0A443NSU4	A0A3S3MIT1	Protein JINGUBANG.	Protein LEO1.	0.792
CKAN_01028200	CKAN_01090800	A0A443NSU4	A0A3S4NVK8	Protein JINGUBANG.	RNA polymerase II accessory factor.	0.865
CKAN_01028200	CKAN_01125500	A0A443NSU4	A0A3S3NM86	Protein JINGUBANG.	Tetratricopeptide TPR-1.	0.774
CKAN_01028200	CKAN_01211800	A0A443NSU4	A0A443NXV1	Protein JINGUBANG.	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic.	0.845
CKAN_01028200	CKAN_01680800	A0A443NSU4	A0A3S3MX02	Protein JINGUBANG.	Protein PAF1.	0.849
CKAN_01028200	CKAN_01779500	A0A443NSU4	A0A3S4PD06	Protein JINGUBANG.	DNA damage-binding protein 1.	0.709
CKAN_01028200	CKAN_02335400	A0A443NSU4	A0A443PTG4	Protein JINGUBANG.	Denticleless protein isoform X3.	0.704

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

26

average node degree:

4.73

avg. local clustering coefficient:

0.878

expected number of edges:

25

PPI enrichment p-value:

0.455

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006351

Transcription, DNA-templated

6 of 143

1.62

2.02

8.08e-06

GO:0006383

Transcription by RNA polymerase III

3 of 19

2.19

1.83

0.00030

GO:0009059

Macromolecule biosynthetic process

8 of 669

1.07

1.13

2.36e-05

GO:0044271

Cellular nitrogen compound biosynthetic process

8 of 730

1.03

1.05

3.71e-05

GO:0044249

Cellular biosynthetic process

9 of 1207

0.87

0.82

6.18e-05

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003677

DNA binding

7 of 547

1.1

1.02

0.00035

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000127

Transcription factor TFIIIC complex

3 of 4

2.87

2.73

1.00e-05

GO:0005667

Transcription regulator complex

5 of 71

1.84

2.37

4.89e-06

GO:0000428

DNA-directed RNA polymerase complex

3 of 81

1.56

0.94

0.0104

GO:0005763

Mitochondrial small ribosomal subunit

2 of 29

1.83

0.73

0.0394

GO:0032991

Protein-containing complex

9 of 1827

0.69

0.56

0.00083

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3529

RNA Polymerase III Transcription Initiation From Type 1 Promoter

4 of 18

2.34

2.71

5.93e-06

CL:3271

Transcription, DNA-templated, and Mediator complex

5 of 160

1.49

1.51

0.00016

CL:3532

RNA polymerase III complex, and Transcription factor TFIIIB complex

2 of 12

2.21

0.87

0.0241

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-76066

RNA Polymerase III Transcription Initiation From Type 2 Promoter

6 of 24

2.39

4.91

1.09e-10

MAP-76061

RNA Polymerase III Transcription Initiation From Type 1 Promoter

6 of 24

2.39

4.91

1.09e-10

MAP-76046

RNA Polymerase III Transcription Initiation

6 of 27

2.34

4.84

1.09e-10

MAP-74158

RNA Polymerase III Transcription

6 of 27

2.34

4.84

1.09e-10

MAP-74160

Gene expression (Transcription)

7 of 606

1.06

1.04

8.76e-05

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