STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01130500MMS19 nucleotide excision repair protein isoform X1. (1161 aa)    
Predicted Functional Partners:
CKAN_01229500
Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.
    
 0.993
CKAN_01574200
Protein AE7 isoform X1.
    
 0.983
CKAN_01573700
Protein AE7 isoform X1.
    
 0.983
CKAN_00048600
DNA repair helicase XPD isoform X1.
    
 0.981
CKAN_00058600
Protein AE7-like protein 1.
    
 0.978
CKAN_02200600
DNA polymerase.
    
 0.931
CKAN_00601300
Regulator of telomere elongation helicase 1 isoform X2.
    
 0.918
CKAN_01967100
Fanconi anemia group J protein isoform X2.
    
 0.918
CKAN_00589300
ATP-dependent DNA helicase DDX11.
    
 0.914
CKAN_01681500
DNA repair helicase XPB1.
   
 
 0.911
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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