STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01139500Nucleotidyl transferase domain-containing protein. (1433 aa)    
Predicted Functional Partners:
CKAN_00112600
DExH-box ATP-dependent RNA helicase DExH9.
   
 
 0.854
CKAN_01006800
Homeobox-leucine zipper protein ATHB-54.
    
 
 0.777
CKAN_01086400
Protein RRP6-like protein 2.
   
 
 0.773
CKAN_01745700
Protein RRP6-like protein 3 isoform X2.
   
 
 0.773
CKAN_01520000
Cell differentiation protein RCD1 isoform X1.
    
   0.734
CKAN_01807100
CCR4-NOT transcription complex subunit 9.
    
   0.734
CKAN_02676800
Cell differentiation protein RCD1.
    
   0.734
CKAN_00461200
DExH-box ATP-dependent RNA helicase DExH11.
   
 
 0.555
CKAN_01211800
DExH-box ATP-dependent RNA helicase DExH15 chloroplastic.
   
 
 0.555
CKAN_00038700
DNA-binding protein HEXBP isoform X1.
   
 
 0.530
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.