STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01164200Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. (332 aa)    
Predicted Functional Partners:
CKAN_01326500
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.824
CKAN_01763000
Vacuolar protein sorting-associated protein 26A.
    
 
 0.792
CKAN_02214500
Vacuolar protein sorting-associated protein 26B.
    
 
 0.792
CKAN_02071000
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.778
CKAN_00780800
Glutamic acid-rich-like protein isoform X1.
   
 
 0.778
CKAN_02154700
Uncharacterized protein.
   
 
 0.778
CKAN_00727800
Photosystem II stability/assembly factor HCF136, chloroplastic.
    
 0.696
CKAN_00518400
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.644
CKAN_02108600
DNA mismatch repair protein MSH3.
    
   0.638
CKAN_01001300
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.626
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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