STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01197100Putative G3BP-like protein. (496 aa)    
Predicted Functional Partners:
CKAN_02662300
USP domain-containing protein; Belongs to the peptidase C19 family.
  
 
 0.919
CKAN_01570600
Protein mago nashi.
    
 0.784
CKAN_01967300
Regulator of nonsense transcripts UPF2 isoform X2.
     
 0.764
CKAN_00964800
Regulator of nonsense transcripts 1.
    
 0.676
CKAN_01630000
Regulator of nonsense transcripts 1.
    
 0.676
CKAN_02527800
Polyadenylate-binding protein-interacting protein 3-like protein.
   
 
 0.638
CKAN_00224000
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7.
    
 
 0.485
CKAN_02284600
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
 0.483
CKAN_00275100
ABC transporter E family member 2.
   
 
 0.457
CKAN_01229700
ABC transporter E family member 2.
   
 
 0.457
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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