STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01207500Protein RADIALIS-like protein 3 isoform X2. (147 aa)    
Predicted Functional Partners:
CKAN_02083600
TATA box-binding protein-associated factor RNA polymerase I subunit B.
    
 0.773
CKAN_00461700
Coiled-coil domain-containing protein 22 isoform X1.
    
 0.662
CKAN_00648700
Interferon-related developmental regulator 1-like protein.
    
 0.611
CKAN_01937000
Cullin-associated NEDD8-dissociated protein 1 isoform X1.
   
  0.581
CKAN_00652800
WD_REPEATS_REGION domain-containing protein.
    
  0.570
CKAN_02219500
BTB/POZ domain-containing protein.
   
 
  0.564
CKAN_01047900
Heat shock protein 17.
   
 0.559
CKAN_00511200
NEDD8-activating enzyme E1 catalytic subunit.
     
 0.550
CKAN_02490700
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
   
 
 0.547
CKAN_00832100
COP9 signalosome complex subunit 2.
   
 
  0.546
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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