STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01253700Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (590 aa)    
Predicted Functional Partners:
CKAN_02479000
Elongator complex protein 1.
   
 0.983
CKAN_01811500
Elongator complex protein 4.
   
 0.973
CKAN_01741300
Elongator complex protein 2-like protein isoform X1.
   
 
 0.971
CKAN_00725900
Protein KTI12.
   
 
 0.917
CKAN_00116500
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
  
 0.823
CKAN_01432600
Uncharacterized protein.
   
 
 0.820
CKAN_00317000
Diphthamide biosynthesis protein 3-like protein.
   
 
 0.820
CKAN_00895800
Uncharacterized protein.
   
 
 0.820
CKAN_00530400
Putative RNA 3'-terminal phosphate cyclase-like protein.
   
  
 0.817
CKAN_01791600
U3 small nucleolar RNA-associated protein 18.
   
   0.794
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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