STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01272200Rhomboid-like protein 19. (307 aa)    
Predicted Functional Partners:
CKAN_02214800
Bet1-like protein SNARE 1-1.
   
 
  0.608
CKAN_00799400
Bet1-like protein SNARE 1-1.
   
 
  0.608
CKAN_00227200
DnaJ domain-containing protein.
   
 
  0.570
CKAN_00497100
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 
  0.570
CKAN_00227500
Uncharacterized protein.
   
 
  0.570
CKAN_02463000
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 
  0.570
CKAN_00227000
Uncharacterized protein.
   
 
  0.570
CKAN_00729600
Syntaxin-31; Belongs to the syntaxin family.
   
 
  0.531
CKAN_00597800
Syntaxin-32-like protein; Belongs to the syntaxin family.
   
 
  0.531
CKAN_01178400
Syntaxin-32; Belongs to the syntaxin family.
   
 
  0.531
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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