STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01295000Protein DCL, chloroplastic. (268 aa)    
Predicted Functional Partners:
CKAN_01667700
Putative endoribonuclease dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.
      
 0.521
CKAN_00231800
Ribonuclease III domain-containing protein; Belongs to the helicase family. Dicer subfamily.
      
 0.519
CKAN_00603200
Argonaute/Dicer protein; Belongs to the argonaute family.
      
 0.510
CKAN_01010900
Protein argonaute 5; Belongs to the argonaute family.
      
 0.509
CKAN_01468400
RNA-binding protein Lupus La.
      
 0.509
CKAN_00471700
Argonaute/Dicer protein; Belongs to the argonaute family.
      
 0.504
CKAN_00900700
Double-stranded RNA-binding protein 1-like protein.
      
 0.502
CKAN_00586800
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.
      
 0.476
CKAN_00387500
Dicer-like protein 4.
      
 0.472
CKAN_00268700
Endoribonuclease Dicer 2 isoform X1; Belongs to the helicase family. Dicer subfamily.
      
 0.454
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.