STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01306700SecY/SEC61-alpha family; Belongs to the SecY/SEC61-alpha family. (476 aa)    
Predicted Functional Partners:
CKAN_02494500
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.995
CKAN_00374900
Preprotein translocase subunit SCY1, chloroplastic isoform X1.
  
 0.995
CKAN_00478100
Ribosomal protein S10.
  
 
 0.994
CKAN_00050700
30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family.
  
 0.991
CKAN_00624300
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
  
 0.991
CKAN_01155000
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
  
 0.991
CKAN_01805700
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
  
 0.990
CKAN_02657800
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.990
CKAN_01846200
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.989
CKAN_01212700
Ribosomal protein S4/S9.
  
 
 0.989
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.