STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01333100Serine/arginine-rich splicing factor SR45a-like protein. (229 aa)    
Predicted Functional Partners:
CKAN_00497800
Nuclear cap-binding protein subunit 1.
    
 0.705
CKAN_01540200
Nuclear cap-binding protein subunit 2.
    
 0.692
CKAN_02624400
U11/U12 small nuclear ribonucleoprotein.
    
 0.654
CKAN_01098200
RNA recognition motif domain-containing protein.
  
 
 
 0.653
CKAN_02221700
Serine/arginine-rich splicing factor SC35-like protein.
  
 
 0.650
CKAN_02342800
Putative small nuclear ribonucleoprotein F.
   
 0.637
CKAN_01337700
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.633
CKAN_01033000
THO complex subunit 4A.
  
 
 0.612
CKAN_00430300
Splicing factor 3B subunit 1.
   
 0.598
CKAN_01958700
DNA-directed RNA polymerase II subunit 4.
    
 0.597
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.