STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01341000Uncharacterized protein. (357 aa)    
Predicted Functional Partners:
CKAN_00248200
Semialdehyde dehydrogenase.
  
 0.934
CKAN_01833100
Arginase 1, mitochondrial; Belongs to the arginase family.
  
 
 0.881
CKAN_00527400
Diaminopimelate epimerase, chloroplastic.
    
 0.880
CKAN_01257900
Argininosuccinate synthase.
  
 0.874
CKAN_01257300
Argininosuccinate synthase.
  
 0.874
CKAN_02627400
Argininosuccinate synthase.
  
 0.874
CKAN_02479700
Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.
  
 
 0.868
CKAN_01114500
Ornithine carbamoyltransferase, chloroplastic-like protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
    
 0.868
CKAN_01256900
Malate synthase; Belongs to the malate synthase family.
    
 0.862
CKAN_00393500
Dihydrodipicolinate reductase-like protein CRR1, chloroplastic.
  
 0.860
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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