STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01353400Far upstream element-binding protein 2-like protein isoform X2. (844 aa)    
Predicted Functional Partners:
CKAN_02469500
Exosome complex component RRP4.
   
  0.640
CKAN_01273200
mRNA-decapping enzyme subunit 2.
     
 0.609
CKAN_02535800
Exosome complex exonuclease RRP46.
     
 0.601
CKAN_02325300
Putative exosome complex component rrp40 isoform X1.
   
 
  0.595
CKAN_00514700
Exosome complex component RRP43.
   
 
  0.590
CKAN_02004600
Exosome complex component RRP41 isoform X1.
   
 
  0.541
CKAN_02221600
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
     
 0.541
CKAN_02475900
Ribonuclease II, chloroplastic/mitochondrial isoform X1.
     
 0.541
CKAN_02604700
Exosome complex component RRP41-like protein isoform X1.
   
 
  0.541
CKAN_01965300
Exosome complex exonuclease RRP44 A; Belongs to the RNR ribonuclease family.
     
 0.541
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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